Chemically Interpretable Molecular Property Prediction and Knowledge Distillation Advances

The field of molecular property prediction and knowledge distillation is rapidly advancing, with a focus on developing chemically interpretable models that can provide novel insights into structure-property relationships. Recent work has centered on leveraging functional groups, teacher-student architectures, and knowledge distillation frameworks to improve model performance and interpretability. Notable developments include the use of implicit clustering distillation methods, delta knowledge distillation, and structure-aware contrastive learning approaches. These innovations have led to state-of-the-art performance on various benchmark datasets and have the potential to accelerate drug and materials discovery.

Noteworthy papers include: Functional Groups are All you Need for Chemically Interpretable Molecular Property Prediction, which proposes a novel framework for encoding molecules based on functional groups, achieving state-of-the-art performance on 33 benchmark datasets. LEAF: Knowledge Distillation of Text Embedding Models with Teacher-Aligned Representations, which presents a knowledge distillation framework for text embedding models, demonstrating its capability by publishing a 23M parameters information retrieval oriented text embedding model that sets a new state-of-the-art on BEIR.

Sources

Functional Groups are All you Need for Chemically Interpretable Molecular Property Prediction

!MSA at BAREC Shared Task 2025: Ensembling Arabic Transformers for Readability Assessment

LEAF: Knowledge Distillation of Text Embedding Models with Teacher-Aligned Representations

iCD: A Implicit Clustering Distillation Mathod for Structural Information Mining

SHREC 2025: Protein surface shape retrieval including electrostatic potential

Delta Knowledge Distillation for Large Language Models

TICA-Based Free Energy Matching for Machine-Learned Molecular Dynamics

HARNESS: Lightweight Distilled Arabic Speech Foundation Models

Structure-Aware Contrastive Learning with Fine-Grained Binding Representations for Drug Discovery

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